PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10031073
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family M-type_MADS
Protein Properties Length: 249aa    MW: 27436.8 Da    PI: 6.5154
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10031073genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.31.1e-24350249
                 ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 rien+snr vtfskRr g++KKA+ELS+LC+aeva+++fs+ ++++ +
  Lus10031073  3 RIENDSNRMVTFSKRRSGVFKKASELSTLCGAEVAIVVFSPGNRVFSF 50
                 8******************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-25153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.843154IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-24271IPR002100Transcription factor, MADS-box
PfamPF003192.5E-26350IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-111631IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-113152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVRIENDSNR MVTFSKRRSG VFKKASELST LCGAEVAIVV FSPGNRVFSF GNPSVENIMN  60
QFYSGGRFSH HHSDMTAHIM EAQRKSKIDA LNIELTQILE NNDKCKKRGE QLDNLLTVHL  120
NRRTIAETPM DEMNQAQLLQ YRAGLETLQA GVLIQAQTRA QAFEEAQAYL AQNQPPAQPV  180
FMNPAPLPRV TDLIQVAQPE FAVNPATTGN YEFYQRFSNE NSDSVPAGDG NMMVNGPFGY  240
GHGAGPSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-37AGAMOUS-like 62